#================================================== #All numbers are READ count #================================================== Total records: 149596600 QC failed: 0 Optical/PCR duplicate: 73826619 Non primary hits 8163448 Unmapped reads: 10776242 mapq < mapq_cut (non-unique): 2356888 mapq >= mapq_cut (unique): 54473403 Read-1: 27242068 Read-2: 27231335 Reads map to '+': 27236488 Reads map to '-': 27236915 Non-splice reads: 39007790 Splice reads: 15465613 Reads mapped in proper pairs: 54458906 Proper-paired reads map to different chrom:0