#================================================== #All numbers are READ count #================================================== Total records: 112270165 QC failed: 0 Optical/PCR duplicate: 40462117 Non primary hits 6470939 Unmapped reads: 7091938 mapq < mapq_cut (non-unique): 2380771 mapq >= mapq_cut (unique): 55864400 Read-1: 27935617 Read-2: 27928783 Reads map to '+': 27932158 Reads map to '-': 27932242 Non-splice reads: 39809994 Splice reads: 16054406 Reads mapped in proper pairs: 55853742 Proper-paired reads map to different chrom:0