#================================================== #All numbers are READ count #================================================== Total records: 66927528 QC failed: 0 Optical/PCR duplicate: 21285175 Non primary hits 3683392 Unmapped reads: 2290827 mapq < mapq_cut (non-unique): 1611164 mapq >= mapq_cut (unique): 38056970 Read-1: 19030534 Read-2: 19026436 Reads map to '+': 19028432 Reads map to '-': 19028538 Non-splice reads: 27250151 Splice reads: 10806819 Reads mapped in proper pairs: 38050730 Proper-paired reads map to different chrom:0