#================================================== #All numbers are READ count #================================================== Total records: 92194286 QC failed: 0 Optical/PCR duplicate: 39081114 Non primary hits 5832326 Unmapped reads: 2623862 mapq < mapq_cut (non-unique): 1871647 mapq >= mapq_cut (unique): 42785337 Read-1: 21394200 Read-2: 21391137 Reads map to '+': 21392620 Reads map to '-': 21392717 Non-splice reads: 30975235 Splice reads: 11810102 Reads mapped in proper pairs: 42777938 Proper-paired reads map to different chrom:0