#================================================== #All numbers are READ count #================================================== Total records: 176086003 QC failed: 0 Optical/PCR duplicate: 80921336 Non primary hits 9454211 Unmapped reads: 12614118 mapq < mapq_cut (non-unique): 3058265 mapq >= mapq_cut (unique): 70038073 Read-1: 35026379 Read-2: 35011694 Reads map to '+': 35018883 Reads map to '-': 35019190 Non-splice reads: 45861275 Splice reads: 24176798 Reads mapped in proper pairs: 70018862 Proper-paired reads map to different chrom:0