#================================================== #All numbers are READ count #================================================== Total records: 108994012 QC failed: 0 Optical/PCR duplicate: 56230144 Non primary hits 10118256 Unmapped reads: 3201471 mapq < mapq_cut (non-unique): 1903503 mapq >= mapq_cut (unique): 37540638 Read-1: 18771960 Read-2: 18768678 Reads map to '+': 18770259 Reads map to '-': 18770379 Non-splice reads: 29025834 Splice reads: 8514804 Reads mapped in proper pairs: 37532026 Proper-paired reads map to different chrom:0