#================================================== #All numbers are READ count #================================================== Total records: 218344204 QC failed: 0 Optical/PCR duplicate: 106040758 Non primary hits 12730946 Unmapped reads: 23316472 mapq < mapq_cut (non-unique): 3277384 mapq >= mapq_cut (unique): 72978644 Read-1: 36499425 Read-2: 36479219 Reads map to '+': 36489000 Reads map to '-': 36489644 Non-splice reads: 51019811 Splice reads: 21958833 Reads mapped in proper pairs: 72953232 Proper-paired reads map to different chrom:0