#================================================== #All numbers are READ count #================================================== Total records: 90797052 QC failed: 0 Optical/PCR duplicate: 27322732 Non primary hits 5795574 Unmapped reads: 2753522 mapq < mapq_cut (non-unique): 2257286 mapq >= mapq_cut (unique): 52667938 Read-1: 26336957 Read-2: 26330981 Reads map to '+': 26333964 Reads map to '-': 26333974 Non-splice reads: 37206555 Splice reads: 15461383 Reads mapped in proper pairs: 52659168 Proper-paired reads map to different chrom:0