#================================================== #All numbers are READ count #================================================== Total records: 116340275 QC failed: 0 Optical/PCR duplicate: 41458306 Non primary hits 6396707 Unmapped reads: 11638060 mapq < mapq_cut (non-unique): 2406132 mapq >= mapq_cut (unique): 54441070 Read-1: 27225944 Read-2: 27215126 Reads map to '+': 27220493 Reads map to '-': 27220577 Non-splice reads: 38707665 Splice reads: 15733405 Reads mapped in proper pairs: 54425340 Proper-paired reads map to different chrom:0