#================================================== #All numbers are READ count #================================================== Total records: 76667842 QC failed: 0 Optical/PCR duplicate: 45318532 Non primary hits 6340284 Unmapped reads: 2449813 mapq < mapq_cut (non-unique): 1277941 mapq >= mapq_cut (unique): 21281272 Read-1: 10641214 Read-2: 10640058 Reads map to '+': 10640604 Reads map to '-': 10640668 Non-splice reads: 14561634 Splice reads: 6719638 Reads mapped in proper pairs: 21272366 Proper-paired reads map to different chrom:0