#================================================== #All numbers are READ count #================================================== Total records: 89097666 QC failed: 0 Optical/PCR duplicate: 43522797 Non primary hits 7431166 Unmapped reads: 1643388 mapq < mapq_cut (non-unique): 1604982 mapq >= mapq_cut (unique): 34895333 Read-1: 17449621 Read-2: 17445712 Reads map to '+': 17447629 Reads map to '-': 17447704 Non-splice reads: 26977159 Splice reads: 7918174 Reads mapped in proper pairs: 34889792 Proper-paired reads map to different chrom:0