#================================================== #All numbers are READ count #================================================== Total records: 76112141 QC failed: 0 Optical/PCR duplicate: 31138447 Non primary hits 5396443 Unmapped reads: 5318069 mapq < mapq_cut (non-unique): 1573302 mapq >= mapq_cut (unique): 32685880 Read-1: 16345749 Read-2: 16340131 Reads map to '+': 16342891 Reads map to '-': 16342989 Non-splice reads: 24011453 Splice reads: 8674427 Reads mapped in proper pairs: 32677194 Proper-paired reads map to different chrom:0