#================================================== #All numbers are READ count #================================================== Total records: 141819151 QC failed: 0 Optical/PCR duplicate: 58200104 Non primary hits 8890959 Unmapped reads: 16168087 mapq < mapq_cut (non-unique): 2568120 mapq >= mapq_cut (unique): 55991881 Read-1: 28003914 Read-2: 27987967 Reads map to '+': 27995740 Reads map to '-': 27996141 Non-splice reads: 38844431 Splice reads: 17147450 Reads mapped in proper pairs: 55971622 Proper-paired reads map to different chrom:0