#================================================== #All numbers are READ count #================================================== Total records: 90529509 QC failed: 0 Optical/PCR duplicate: 46975353 Non primary hits 7886055 Unmapped reads: 3611665 mapq < mapq_cut (non-unique): 1575618 mapq >= mapq_cut (unique): 30480818 Read-1: 15241892 Read-2: 15238926 Reads map to '+': 15240386 Reads map to '-': 15240432 Non-splice reads: 22781263 Splice reads: 7699555 Reads mapped in proper pairs: 30475158 Proper-paired reads map to different chrom:0