#================================================== #All numbers are READ count #================================================== Total records: 75371642 QC failed: 0 Optical/PCR duplicate: 23176690 Non primary hits 4332326 Unmapped reads: 2861333 mapq < mapq_cut (non-unique): 1765787 mapq >= mapq_cut (unique): 43235506 Read-1: 21620698 Read-2: 21614808 Reads map to '+': 21617669 Reads map to '-': 21617837 Non-splice reads: 30988702 Splice reads: 12246804 Reads mapped in proper pairs: 43226218 Proper-paired reads map to different chrom:0