#================================================== #All numbers are READ count #================================================== Total records: 68441869 QC failed: 0 Optical/PCR duplicate: 20709714 Non primary hits 4300595 Unmapped reads: 2711309 mapq < mapq_cut (non-unique): 1683747 mapq >= mapq_cut (unique): 39036504 Read-1: 19520114 Read-2: 19516390 Reads map to '+': 19518292 Reads map to '-': 19518212 Non-splice reads: 28056174 Splice reads: 10980330 Reads mapped in proper pairs: 39030122 Proper-paired reads map to different chrom:0