#================================================== #All numbers are READ count #================================================== Total records: 76550486 QC failed: 0 Optical/PCR duplicate: 25420379 Non primary hits 4660044 Unmapped reads: 2114851 mapq < mapq_cut (non-unique): 1867224 mapq >= mapq_cut (unique): 42487988 Read-1: 21246327 Read-2: 21241661 Reads map to '+': 21243984 Reads map to '-': 21244004 Non-splice reads: 29142657 Splice reads: 13345331 Reads mapped in proper pairs: 42480938 Proper-paired reads map to different chrom:0