#================================================== #All numbers are READ count #================================================== Total records: 112008287 QC failed: 0 Optical/PCR duplicate: 45548337 Non primary hits 7885643 Unmapped reads: 2076971 mapq < mapq_cut (non-unique): 2699261 mapq >= mapq_cut (unique): 53798075 Read-1: 26903015 Read-2: 26895060 Reads map to '+': 26899071 Reads map to '-': 26899004 Non-splice reads: 34297322 Splice reads: 19500753 Reads mapped in proper pairs: 53783594 Proper-paired reads map to different chrom:0