#================================================== #All numbers are READ count #================================================== Total records: 120298041 QC failed: 0 Optical/PCR duplicate: 38193133 Non primary hits 6571399 Unmapped reads: 11688798 mapq < mapq_cut (non-unique): 2596599 mapq >= mapq_cut (unique): 61248112 Read-1: 30629486 Read-2: 30618626 Reads map to '+': 30624001 Reads map to '-': 30624111 Non-splice reads: 44021065 Splice reads: 17227047 Reads mapped in proper pairs: 61231800 Proper-paired reads map to different chrom:0