#================================================== #All numbers are READ count #================================================== Total records: 174034813 QC failed: 0 Optical/PCR duplicate: 73415495 Non primary hits 9734167 Unmapped reads: 9619044 mapq < mapq_cut (non-unique): 3302754 mapq >= mapq_cut (unique): 77963353 Read-1: 38986432 Read-2: 38976921 Reads map to '+': 38981620 Reads map to '-': 38981733 Non-splice reads: 50396373 Splice reads: 27566980 Reads mapped in proper pairs: 77951140 Proper-paired reads map to different chrom:0