#================================================== #All numbers are READ count #================================================== Total records: 98518408 QC failed: 0 Optical/PCR duplicate: 29562183 Non primary hits 5575820 Unmapped reads: 4901880 mapq < mapq_cut (non-unique): 2317966 mapq >= mapq_cut (unique): 56160559 Read-1: 28084241 Read-2: 28076318 Reads map to '+': 28080311 Reads map to '-': 28080248 Non-splice reads: 40710670 Splice reads: 15449889 Reads mapped in proper pairs: 56148186 Proper-paired reads map to different chrom:0